Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_1154Putative AB-hydrolase YheT. (349 aa)    
Predicted Functional Partners:
cce_2948
Conserved hypothetical protein.
  
     0.719
cce_0534
Unknown.
  
     0.651
cce_3309
Unknown.
  
     0.564
cce_2933
Conserved hypothetical protein.
  
     0.519
cce_1153
Esterase.
   
   0.492
cce_4770
Hypothetical protein.
  
     0.491
cce_0906
Hypothetical protein.
  
 
   0.468
cce_0907
Unknown.
  
 
   0.426
cce_0214
Conserved hypothetical protein.
  
     0.424
cce_2439
Hypothetical protein; Contains a TrkA-N domain.
  
     0.424
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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