STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1158Unknown; Contains tetratricopeptide repeat domains. (285 aa)    
Predicted Functional Partners:
cce_0862
Unknown.
  
     0.736
cce_2401
Unknown; Contains glutaredoxin 2 and thioredoxin fold domains.
  
     0.693
cce_0056
Hypothetical protein; Contains an S-layer homology (SLH) domain.
  
     0.678
cce_1922
Unknown.
  
     0.674
cce_0449
Unknown.
  
     0.651
cce_2736
Hypothetical protein.
  
     0.641
cce_4116
Hypothetical protein; Contains DUF477.
  
 
   0.630
cce_1106
Conserved hypothetical protein.
  
     0.627
cce_3909
Conserved hypothetical protein.
  
     0.616
cce_4369
Conserved hypothetical protein.
  
     0.616
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.