STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobWCobalamin biosynthesis protein/P47K. (346 aa)    
Predicted Functional Partners:
cobN
Cobaltochelatase.
 
  
 0.822
hypB
Hydrogenase accessory protein.
      
 0.780
znuB
Zinc ABC transporter, permease protein.
  
  
 0.666
petC2
Cytochrome b6-f complex Rieske iron-sulfur protein, plastoquinol--plastocyanin reductase; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
      
 0.618
rpl28
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.607
petC1
Cytochrome b6-f complex Rieske iron-sulfur subunit, plastoquinol--plastocyanin reductase; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
      
 0.594
cce_1188
Hypothetical protein; Contains a type I restriction enzyme R protein, N terminus domain.
       0.586
rpl33
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.581
cce_1185
Two-component hybrid sensor and regulator.
       0.565
cce_1186
Two-component hybrid sensor and regulator.
       0.565
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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