Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_0650 | cce_1336 | cce_0650 | cce_1336 | UPF YGGT-containing protein. | Putative RNA-binding S4 protein. | 0.728 |
| cce_0650 | sepF | cce_0650 | cce_2614 | UPF YGGT-containing protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.731 |
| cce_1335 | cce_1336 | cce_1335 | cce_1336 | Hypothetical protein. | Putative RNA-binding S4 protein. | 0.773 |
| cce_1336 | cce_0650 | cce_1336 | cce_0650 | Putative RNA-binding S4 protein. | UPF YGGT-containing protein. | 0.728 |
| cce_1336 | cce_1335 | cce_1336 | cce_1335 | Putative RNA-binding S4 protein. | Hypothetical protein. | 0.773 |
| cce_1336 | cce_2127 | cce_1336 | cce_2127 | Putative RNA-binding S4 protein. | DUF901-containing protein. | 0.766 |
| cce_1336 | prfB | cce_1336 | cce_4187 | Putative RNA-binding S4 protein. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.755 |
| cce_1336 | psbB | cce_1336 | cce_1837 | Putative RNA-binding S4 protein. | Photosystem II CP47 protein, 47 kD chlorophyll-binding protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily. | 0.823 |
| cce_1336 | rpl19 | cce_1336 | cce_0801 | Putative RNA-binding S4 protein. | 50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.711 |
| cce_1336 | rpl21 | cce_1336 | cce_1391 | Putative RNA-binding S4 protein. | 50s ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.710 |
| cce_1336 | rpl33 | cce_1336 | cce_3348 | Putative RNA-binding S4 protein. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.739 |
| cce_1336 | rpl9 | cce_1336 | cce_4398 | Putative RNA-binding S4 protein. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.735 |
| cce_1336 | sepF | cce_1336 | cce_2614 | Putative RNA-binding S4 protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.731 |
| cce_2127 | cce_1336 | cce_2127 | cce_1336 | DUF901-containing protein. | Putative RNA-binding S4 protein. | 0.766 |
| cce_2127 | sepF | cce_2127 | cce_2614 | DUF901-containing protein. | Unknown; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.441 |
| prfB | cce_1336 | cce_4187 | cce_1336 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Putative RNA-binding S4 protein. | 0.755 |
| prfB | rpl19 | cce_4187 | cce_0801 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.964 |
| prfB | rpl21 | cce_4187 | cce_1391 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50s ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
| prfB | rpl33 | cce_4187 | cce_3348 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.964 |
| prfB | rpl9 | cce_4187 | cce_4398 | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.969 |
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