Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_0746 | cce_1363 | cce_0746 | cce_1363 | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | 0.696 |
| cce_0746 | cce_1364 | cce_0746 | cce_1364 | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Putative 60 kD inner membrane insertion protein. | 0.843 |
| cce_0746 | rnpA | cce_0746 | cce_1366 | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Protein subunit of ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.913 |
| cce_0746 | rpl2 | cce_0746 | cce_4017 | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.654 |
| cce_1363 | cce_0746 | cce_1363 | cce_0746 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.696 |
| cce_1363 | cce_1364 | cce_1363 | cce_1364 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Putative 60 kD inner membrane insertion protein. | 0.917 |
| cce_1363 | cce_3391 | cce_1363 | cce_3391 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Unknown; Contains a KH, prokaryotic type domain. | 0.946 |
| cce_1363 | gidB | cce_1363 | cce_3918 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Glucose inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.732 |
| cce_1363 | lgt | cce_1363 | cce_0054 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Polipoprotein diacylglyceryltransferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.646 |
| cce_1363 | rne | cce_1363 | cce_0277 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Ribonuclease E. | 0.759 |
| cce_1363 | rnpA | cce_1363 | cce_1366 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Protein subunit of ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.819 |
| cce_1363 | rpl2 | cce_1363 | cce_4017 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.655 |
| cce_1363 | rpl29 | cce_1363 | cce_4022 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.637 |
| cce_1363 | trpA | cce_1363 | cce_2130 | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | Tryptophan synthase alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.628 |
| cce_1364 | cce_0746 | cce_1364 | cce_0746 | Putative 60 kD inner membrane insertion protein. | DUF37-containing protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.843 |
| cce_1364 | cce_1363 | cce_1364 | cce_1363 | Putative 60 kD inner membrane insertion protein. | Unknown; Contains a single-stranded nucleic acid binding R3H domain. | 0.917 |
| cce_1364 | gidB | cce_1364 | cce_3918 | Putative 60 kD inner membrane insertion protein. | Glucose inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.577 |
| cce_1364 | lgt | cce_1364 | cce_0054 | Putative 60 kD inner membrane insertion protein. | Polipoprotein diacylglyceryltransferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.779 |
| cce_1364 | rnpA | cce_1364 | cce_1366 | Putative 60 kD inner membrane insertion protein. | Protein subunit of ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.949 |
| cce_1364 | rpl2 | cce_1364 | cce_4017 | Putative 60 kD inner membrane insertion protein. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.811 |
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