Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cce_1372Carboxyl-terminal protease; Belongs to the peptidase S41A family. (433 aa)    
Predicted Functional Partners:
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
 
 0.612
cce_0630
Putative peptidase M50.
  
  
 0.609
pepN
Aminopeptidase N.
     
 0.600
clpC1
ATP-dependent Clp protease, regulatory subunit; Belongs to the ClpA/ClpB family.
     
 0.597
gst1
Glutathione S-transferase.
      
 0.565
cce_3632
Putative prenyltransferase.
   
 
 0.533
cce_1370
Putative extracellular solute-binding protein, family 3 precursor.
   
   0.511
cce_1373
Hypothetical protein; Essential cell division protein.
       0.508
cce_1371
Hypothetical protein; Contains UPF0118.
       0.504
secD
Protein export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   0.497
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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