STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1448Contains a TspO/MBR-related protein domain. (248 aa)    
Predicted Functional Partners:
cce_1447
Hypothetical protein.
       0.664
cce_1446
Hypothetical protein.
  
    0.646
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
     0.574
cce_3078
Polyketide synthase.
 
  
 0.538
cce_4675
Hypothetical protein; Contains Serralysin-like metalloprotease, C-terminal and Peptidase, archaeal and bacterial C-terminal domains.
  
     0.514
cce_4526
Probable oxidoreductase, short chain dehydrogenase/reductase family.
  
    0.502
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.478
cce_3079
Probable polyketide synthase.
  
  
 0.454
chlH2
Magnesium chelatase, subunit H.
  
    0.447
chlB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.
  
  
 0.432
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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