Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
cce_1468Putative lipopolysaccharide biosynthesis. (754 aa)    
Predicted Functional Partners:
cce_1803
Contains a polysaccharide export protein domain.
 
 
 0.989
cce_4188
Unknown; Contains a polysaccharide export protein domain.
 
 
 0.982
cce_3429
Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains.
 
  
 0.958
cce_3234
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.954
cce_0127
Glucosyl transferase.
 
  
 0.946
cce_3092
Probable glycosyl transferase.
 
  
 0.946
hoxF
NADH dehydrogenase I chain F.
     
 0.711
cce_2061
Mannose-1-phosphate guanyltransferase.
  
  
 0.638
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
     
 0.635
cce_1994
Unknown.
 
  
0.635
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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