Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
cce_1470ATP-binding protein of ABC transporter. (340 aa)    
Predicted Functional Partners:
cce_1471
Putative ABC-2 type transporter.
  
 0.966
cce_0161
Putative membrane protein.
  
 
 0.552
cce_3642
Putative ABC-2 type transport system permease protein.
  
 
 0.552
psbQ
Photosystem II protein Q.
      
 0.525
cpcS
Unknown; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.520
apcB
Allophycocyanin beta subunit.
  
     0.510
cpcS-2
Unknown; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.479
cce_3078
Polyketide synthase.
  
 
 0.470
cpcB
Phycocyanin beta subunit.
  
     0.458
apcF
Phycobilisome core component.
  
     0.452
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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