STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1475WD-repeat protein. (349 aa)    
Predicted Functional Partners:
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
 
 0.877
cce_2163
Hypothetical protein.
 
     0.813
cce_3013
Hypothetical protein; Contains a WD-40 repeat and peptidase C14, caspase catalytic subunit p20.
     0.796
cce_1487
Hypothetical protein; Contains a WD40-like domain.
  
     0.712
cce_4858
WD40-like beta-propeller protein.
  
     0.672
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
    
 0.617
cce_1076
Hypothetical protein; Contains a GUN4-like domain and a Peptidase, trypsin-like serine and cysteine domain.
 
 
  0.607
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.599
cce_2116
Serine/threonine protein kinase.
 
    0.550
pknA
Serine/threonine kinase.
 
    0.533
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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