STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1484Mn2+/Zn2+ family ABC transporter, periplasmic binding protein; Belongs to the bacterial solute-binding protein 9 family. (334 aa)    
Predicted Functional Partners:
cce_1486
Mn2+/Zn2+ family ABC transporter, permease protein.
  
 0.986
cce_1485
Mn2+/Zn2+ family ABC transporter, ATP-binding protein.
 
  
 0.959
mntB
Mn2+ ABC transporter, permease protein.
  
 0.931
znuB
Zinc ABC transporter, permease protein.
  
 0.918
mntA
Mn2+ ABC transporter, ATP-binding protein.
 
  
 0.898
cce_4860
ABC transporter permease protein.
  
 0.897
znuA
Zinc ABC transporter, ATP-binding protein.
 
  
 0.868
cce_4861
ATP-binding protein of ABC transporter.
 
  
 0.865
rps14
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.460
rpl28
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.445
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.