STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1537Unknown; Belongs to the orange carotenoid-binding protein family. (161 aa)    
Predicted Functional Partners:
cce_0742
Unknown.
     0.822
cce_3573
Unknown.
  
     0.751
cce_4169
Unknown.
  
     0.744
apcE
Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
   0.727
cce_4656
Unknown.
  
     0.664
cce_0005
Conserved hypothetical protein.
  
     0.659
apcD
allophycocyanin-B.
  
 
   0.652
cce_2382
Conserved hypothetical protein.
  
     0.651
apcA
Allophycocyanin alpha subunit.
  
 
   0.645
cce_3834
Unknown.
  
     0.641
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.