STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1539Hypothetical protein; Contains an acid phosphatase/vanadium-dependent haloperoxidase domain. (224 aa)    
Predicted Functional Partners:
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.869
cce_1538
Unknown; Contains a glycosyl transferase, family 39 domain.
  
  
 0.797
cce_4494
Hypothetical protein.
    
 
 0.756
cce_1466
Probable AMP-dependent synthetase and ligase.
   
 0.653
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 0.605
cce_1025
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
   
 0.500
cce_1028
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
   
 0.500
cce_3758
AMP-dependent synthetase and ligase.
   
 0.500
cce_1540
Hypothetical protein.
       0.498
cce_3073
Peptide synthetase.
    
 0.498
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.