Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_1560Serine/threonine protein kinase. (461 aa)    
Predicted Functional Partners:
cce_0149
Probable protein phosphatase.
 
 
 0.824
cce_0316
Probable serin-threonin phosphatase.
  
   0.821
cce_2930
Unknown; Contains a phosphatase 2C-like domain.
  
   0.819
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
 
    0.562
cce_4097
Two-component sensor serine/threonine kinase.
  
   
 0.556
cce_1000
Unknown; Contains a SMAD/FHA domain.
 
  
   0.536
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.526
cce_1559
TRNA (Guanine-N(2)-)-methyltransferase.
       0.412
cce_2250
Unknown.
  
     0.409
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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