Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1579Unknown; Contains a fimbrial assembly domain. (242 aa)    
Predicted Functional Partners:
cce_1580
Unknown.
 
 
 0.998
pilM
Type IV pilus assembly protein.
  
 
 0.995
gspD
General secretion pathway protein D.
 
 
 0.976
cce_4730
Unknown.
  
     0.769
cce_1053
Conserved hypothetical protein.
  
     0.768
cce_2729
Unknown.
  
     0.767
cce_3269
Unknown.
  
     0.765
ccmN
Carbon dioxide concentrating mechanism protein.
  
     0.764
cce_3864
Putative S-layer OprB family carbohydrate-selective porin; Belongs to the OprB family.
  
     0.762
cce_2633
Putative outer membrane protein; Belongs to the OprB family.
  
     0.760
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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