STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1630Two component transcriptional regulator, winged helix family. (225 aa)    
Predicted Functional Partners:
cce_4426
Two-component sensor histidine kinase.
 
 0.982
cce_1185
Two-component hybrid sensor and regulator.
 
 0.907
cce_1777
Probable two-component hybrid sensor and regulator.
 
 
 0.864
cce_3379
Two-component sensor histidine kinase.
 
   0.827
cce_0164
Two-component sensor histidine kinase.
 
 0.811
cce_0969
Two-component sensor histidine kinase.
 
   0.805
cce_3327
Two-component sensor histidine kinase.
  
   0.793
cce_1694
Two component sensor histidine kinase.
 
   0.786
cce_3520
Two-component sensor histidine kinase.
 
   0.784
sasA
Adaptive-response sensory histidine kinase; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.
 
   0.770
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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