Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1636Unknown. (94 aa)    
Predicted Functional Partners:
cbiJ
Probable precorrin-6x reductase.
       0.783
cce_1634
Conserved hypothetical protein.
       0.773
cce_0301
Unknown; Contains glutathione S-transferase, C-terminal-like and Thioredoxin fold domains.
  
     0.599
cce_2767
Unknown; Contains a phytoene dehydrogenase-related protein domain.
  
     0.535
cce_1633
Unknown; Contains a TolB, C-terminal domain.
       0.531
cce_1632
PEP/pyruvate-binding protein.
       0.517
cce_3058
Hypothetical protein.
  
     0.491
cce_3059
HlyD-family secretion protein.
  
     0.474
cce_4220
Unknown; Contains a UspA domain.
      
 0.462
cce_4235
Conserved hypothetical protein.
      
 0.462
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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