STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1647Putative ATPase. (398 aa)    
Predicted Functional Partners:
cce_3712
Putative histone deacetylase superfamily protein.
   
 0.765
cce_3250
Hypothetical protein.
    
 
 0.764
cce_4657
Putative peptidase C14, caspase catalytic.
   
 0.710
cce_1646
Hypothetical protein; Contains a peptidase, archaeal and bacterial C-terminal domain.
   
  0.570
holB
DNA polymerase III, delta prime subunit.
   
  0.563
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.548
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.535
cce_1076
Hypothetical protein; Contains a GUN4-like domain and a Peptidase, trypsin-like serine and cysteine domain.
   
 0.476
cce_2232
Two-component sensor histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
  0.445
rbcS
Ribulose bisphosphate carboxylase small subunit.
 
  
 0.432
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.