Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1680Hypothetical protein; Contains an Na+/H+ antiporter MnhB subunit-related protein domain. (220 aa)    
Predicted Functional Partners:
cce_1686
DUF67-containing protein.
 
 
 0.998
cce_1684
Conserved hypothetical protein.
 
 
 0.996
cce_1682
Conserved hypothetical protein.
 
 
 0.995
cce_1685
NADH dehydrogenase subunit 4-like protein.
 
 
 0.995
cce_2494
NADH dehydrogenase subunit 4-like protein.
 
 
 0.990
cce_1681
Unknown.
 
 
 
 0.986
cce_1683
Conserved hypothetical protein.
 
   
 0.935
ndhF3
NADH dehydrogenase subunit 5.
  
 
 0.801
ndhF4
NADH dehydrogenase subunit 5.
  
 
 0.801
ndhF1
NADH dehydrogenase subunit 5.
  
 
 0.801
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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