Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_1743 | cce_1745 | cce_1743 | cce_1745 | Probable peptidase M52, hydrogen uptake protein. | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.505 |
| cce_1743 | cobD | cce_1743 | cce_1744 | Probable peptidase M52, hydrogen uptake protein. | L-threonine-O-3-phosphate decarboxylase. | 0.473 |
| cce_1745 | cce_1743 | cce_1745 | cce_1743 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Probable peptidase M52, hydrogen uptake protein. | 0.505 |
| cce_1745 | cce_5214 | cce_1745 | cce_5214 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Putative cold shock protein, DNA-binding. | 0.402 |
| cce_1745 | cobD | cce_1745 | cce_1744 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | L-threonine-O-3-phosphate decarboxylase. | 0.792 |
| cce_1745 | polA | cce_1745 | cce_2255 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.405 |
| cce_1745 | rpl19 | cce_1745 | cce_0801 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.474 |
| cce_1745 | rpl32 | cce_1745 | cce_3256 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.458 |
| cce_1745 | rps15 | cce_1745 | cce_4123 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.543 |
| cce_1745 | rps20 | cce_1745 | cce_3490 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.665 |
| cce_1745 | topA1 | cce_1745 | cce_1235 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.418 |
| cce_1745 | tufA | cce_1745 | cce_4088 | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Elongation factor EF-Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.427 |
| cce_5214 | cce_1745 | cce_5214 | cce_1745 | Putative cold shock protein, DNA-binding. | DNA binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.402 |
| cce_5214 | polA | cce_5214 | cce_2255 | Putative cold shock protein, DNA-binding. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.434 |
| cce_5214 | rpl19 | cce_5214 | cce_0801 | Putative cold shock protein, DNA-binding. | 50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.730 |
| cce_5214 | rpl32 | cce_5214 | cce_3256 | Putative cold shock protein, DNA-binding. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.572 |
| cce_5214 | rps15 | cce_5214 | cce_4123 | Putative cold shock protein, DNA-binding. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.593 |
| cce_5214 | rps20 | cce_5214 | cce_3490 | Putative cold shock protein, DNA-binding. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.602 |
| cce_5214 | tufA | cce_5214 | cce_4088 | Putative cold shock protein, DNA-binding. | Elongation factor EF-Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.535 |
| cobD | cce_1743 | cce_1744 | cce_1743 | L-threonine-O-3-phosphate decarboxylase. | Probable peptidase M52, hydrogen uptake protein. | 0.473 |
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