Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacBProbable D-alanyl-D-alanine carboxypeptidase. (493 aa)    
Predicted Functional Partners:
cce_2331
Putative D-alanyl-D-alanine carboxypeptidase.
  
  
 
0.923
cce_3444
Penicillin-binding protein.
     
 0.909
cce_3458
Penicillin binding protein, transpeptidase.
     
 0.909
cce_3005
Carboxypeptidase.
     
 0.907
cce_3531
Penicillin-binding protein 1A.
     
 0.906
cce_0944
Putative peptidase S13, D-Ala-D-Ala carboxypeptidase C.
  
     0.769
cce_1780
Unknown.
       0.510
cce_3602
Putative peptidase S66, LD-carboxypeptidase A.
 
   
 0.463
cce_2227
Putative peptidase S66, LD-carboxypeptidase A.
 
   
 0.449
cce_2062
Putative aldose 1-epimerase.
  
    0.413
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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