Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1792Unknown; Contains an acid phosphatase/vanadium-dependent haloperoxidase domain. (556 aa)    
Predicted Functional Partners:
cce_0699
Hypothetical protein.
 
  
 0.545
cce_0891
Unknown; Contains an outer membrane efflux protein domain.
    
 
 0.542
cce_3082
Putative bacterial luciferase-like protein.
  
     0.469
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
     0.436
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
      
 0.423
cce_0806
Unknown; Contains a rieske [2Fe-2S] region domain.
  
     0.420
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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