Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1801Unknown; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family. (116 aa)    
Predicted Functional Partners:
cce_0234
Unknown; Contains a stage II sporulation E domain.
 
 
 0.822
pmgA
Photomixotrophic growth related protein.
  
 
 0.791
cce_3319
Hypothetical protein; Contains an ATP-binding region, ATPase-like domain.
  
 
 0.791
cce_3428
Hypothetical protein.
  
 
 0.791
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
  
 0.782
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
  
 0.782
cce_0656
Two-component hybrid sensor and regulator.
 
  
 0.764
cce_4176
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, and SMAD/FHA domain.
  
    0.756
cce_4650
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, and SMAD/FHA domain.
  
    0.756
cce_3321
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
     0.702
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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