STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1816Transcriptional regulatory protein. (200 aa)    
Predicted Functional Partners:
cce_1423
Transcriptional regulator.
  
     0.743
cce_1612
Probable cyclic nucleotide-binding protein.
  
     0.717
cce_3798
Hypothetical protein; Contains a cyclic nucleotide-binding domain and a winged helix repressor DNA-binding domain.
  
     0.662
cce_1814
Putative peptidoglycan-binding peptidase, M23B family.
  
    0.576
cce_1815
Hypothetical protein.
       0.572
cce_2716
Unknown.
  
 
 
 0.564
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.491
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.471
cce_1934
Putative adenylate/guanylate cyclase.
 
 
 
 0.446
cce_1185
Two-component hybrid sensor and regulator.
  
 
 0.424
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.