STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1820Putative small mechanosensitive ion channel, MscS family. (376 aa)    
Predicted Functional Partners:
cce_1819
Unknown; Contains a MscS Mechanosensitive ion channel domain.
 
    
0.816
cce_1821
Putative HAD-superfamily hydrolase, subfamily IA.
       0.689
cce_3877
Hypothetical protein; Contains a mechanosensitive ion channel, MscS domain.
  
     0.679
cce_4212
rfrA family pentapeptide repeat.
  
     0.590
cce_1483
Hypothetical protein; Contains a MscS Mechanosensitive ion channel domain.
  
     0.518
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.465
cce_1090
Putative Na+/K+/2Cl- cotransporter.
  
   
 0.451
cce_4799
rfrA family pentapeptide repeat.
  
     0.444
cce_1979
rfrA family pentapeptide repeat.
  
     0.416
cce_1012
Unknown.
  
     0.407
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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