STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknASerine/threonine kinase. (538 aa)    
Predicted Functional Partners:
cce_0149
Probable protein phosphatase.
 
 
 0.845
cce_0316
Probable serin-threonin phosphatase.
   0.831
cce_2930
Unknown; Contains a phosphatase 2C-like domain.
 
   0.830
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
 
    0.720
cce_1852
Polysaccharide deacetylase.
 
     0.644
cce_2196
WD-repeat protein.
 
    0.575
cce_4199
ATP-binding protein of ABC transporter.
  
 
 0.546
cce_1475
WD-repeat protein.
 
    0.533
cce_0481
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
    0.499
cce_1000
Unknown; Contains a SMAD/FHA domain.
 
  
 
 0.481
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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