Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1878Two-component sensor histidine kinase. (1112 aa)    
Predicted Functional Partners:
cce_1877
Hypothetical protein; Contains a PAS domain, GGDEF domain, EAL domain, Response regulator receiver domain, CheY-like domain, and a PAS fold domain.
 
   
 0.765
cce_1185
Two-component hybrid sensor and regulator.
 
   
0.601
cce_1777
Probable two-component hybrid sensor and regulator.
 
   
 0.591
cce_1555
Unknown; Contains a GAF domain.
 
   
 0.562
cce_0656
Two-component hybrid sensor and regulator.
   
 0.524
cce_2376
Two-component response regulator.
  
   
 0.506
cce_1186
Two-component hybrid sensor and regulator.
 
   
 0.485
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
     
 0.483
cce_0164
Two-component sensor histidine kinase.
   
 0.460
cce_1138
Two-component hybrid sensor and regulator.
   
 0.451
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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