Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1919Conserved hypothetical protein. (390 aa)    
Predicted Functional Partners:
cce_0488
Unknown; Contains a GUN4-like domain.
  
     0.771
cce_3513
Conserved hypothetical protein.
  
   0.749
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
 
   0.721
cce_4655
Conserved hypothetical protein.
 
     0.716
cce_3752
Conserved hypothetical protein.
  
     0.713
psb28
Photosystem II 13 kD protein; Belongs to the Psb28 family.
 
     0.702
cce_2140
Unknown.
  
     0.696
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 0.695
psbO
Photosystem II manganese-stabilizing polypeptide, 33 kD extrinsic protein; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII.
  
 
   0.694
cce_2078
DUF1350-containing protein.
  
     0.681
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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