Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1922Unknown. (359 aa)    
Predicted Functional Partners:
rbcX
Chaperonin-like protein RbcX.
  
 
   0.965
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
    
 
 0.941
ccmM
Carbon dioxide concentrating mechanism protein.
  
 
   0.803
cce_0318
Unknown.
  
     0.775
cce_2729
Unknown.
  
     0.774
cyl0006
Hypothetical protein; Contains a Mo-dependent nitrogenase, C-terminal domain.
  
     0.773
cce_2427
Hypothetical protein; Contains a Mo-dependent nitrogenase, C-terminal domain.
  
     0.773
ccmN
Carbon dioxide concentrating mechanism protein.
  
     0.773
cce_1524
CHP02652-containing protein.
  
     0.772
cce_4610
Hypothetical protein; Contains a Mo-dependent nitrogenase, C-terminal domain.
  
     0.772
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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