Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
apcFPhycobilisome core component. (169 aa)    
Predicted Functional Partners:
apcE
Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.997
apcC
Phycobilisome LC linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
 
 
 
 0.997
cpcC1
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.994
cpcG
Phycobilisome rod-core linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
 
 0.994
cpcA
Phycocyanin alpha subunit.
  
 
 
0.976
apcD
allophycocyanin-B.
 
 
 
0.975
cpcC2
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
  
 
 
 0.963
cpcB
Phycocyanin beta subunit.
  
 
 
0.962
apcA
Allophycocyanin alpha subunit.
 
 
 
0.958
psbU
Photosystem II 12 kD extrinsic protein; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
 
 
 0.956
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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