Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_1957Hypothetical protein; Contains UPF0150. (73 aa)    
Predicted Functional Partners:
cce_1958
Hypothetical protein; Contains a YcfA domain.
   
   0.815
cce_1959
Hypothetical protein; Contains a plasmid stabilization system domain.
 
     0.555
cce_3155
Hypothetical protein; Contains a YcfA domain.
  
 
   0.533
cce_4274
Conserved hypothetical protein.
  
     0.523
cce_3294
Unknown.
  
     0.517
cce_2118
Conserved hypothetical protein.
  
     0.496
cce_3857
Hypothetical protein.
  
     0.493
cce_1960
Unknown.
       0.491
cce_2931
Conserved hypothetical protein.
  
     0.490
cce_0721
Hypothetical protein; Contains a Phage integrase-like, catalytic core domain; Belongs to the 'phage' integrase family.
  
     0.488
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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