STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_1979rfrA family pentapeptide repeat. (682 aa)    
Predicted Functional Partners:
cce_1894
Conserved hypothetical protein.
  
     0.631
cce_2926
Unknown.
  
     0.596
cce_2823
Conserved hypothetical protein.
  
     0.545
cce_3645
Putative peptidase C14, caspase catalytic.
  
     0.530
cce_4806
Unknown.
  
    0.522
cce_2429
Conserved hypothetical protein.
  
     0.485
cce_2919
Hypothetical protein; Contains an Armadillo-like helical domain.
  
     0.451
cce_1872
Unknown; Contains a Cytochrome c region domain.
  
     0.442
cce_0699
Hypothetical protein.
  
     0.436
cce_2950
Conserved hypothetical protein.
  
     0.427
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.