STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphAProbable phytochrome A, two-component sensor protein. (760 aa)    
Predicted Functional Partners:
cce_1982
CheY-like two-component hybrid sensor and regulator.
 
 0.998
phy
Probable phytochrome.
  
  
 
0.909
cce_1555
Unknown; Contains a GAF domain.
 
      0.895
cce_3714
Putative two-component system response regulator.
  
 
 
 0.768
cce_1520
Two-component response regulator.
 
     0.712
rpaA
Two-component response regulator.
      
 0.662
cce_0602
Probable CAB/ELIP/HLIP family protein.
      
 0.662
cce_4826
CAB/ELIP/HLIP family protein.
      
 0.662
cce_3833
Flavoprotein, putative diflavin flavoprotein.
      
 0.661
cce_3835
Flavoprotein.
      
 0.661
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.