Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2006Hypothetical protein; Contains a DoxX domain. (152 aa)    
Predicted Functional Partners:
cce_3318
Thiosulfate sulfurtransferase.
  
 
 0.906
cce_2007
Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.648
cce_0699
Hypothetical protein.
  
     0.637
cce_1067
Unknown.
  
     0.595
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
    0.583
cce_3492
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
    0.522
cce_1708
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.511
cce_2008
Hypothetical protein.
       0.486
cce_4806
Unknown.
 
     0.485
cce_3124
Unknown.
  
     0.478
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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