STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2009Unknown; Contains a beta-lactamase-like domain. (286 aa)    
Predicted Functional Partners:
cce_1555
Unknown; Contains a GAF domain.
 
      0.894
cce_1934
Putative adenylate/guanylate cyclase.
 
     0.725
cyaA
Adenylate cyclase.
 
     0.683
cce_4728
Adenylyl/guanylyl cyclase.
 
     0.608
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.565
rnz
Putative Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
      
 0.544
cce_2008
Hypothetical protein.
       0.506
cce_3558
Two-component hybrid sensor and regulator.
 
  
 0.489
cce_2299
Conserved hypothetical protein.
  
     0.466
cce_1777
Probable two-component hybrid sensor and regulator.
 
  
 0.428
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.