Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2020Conserved hypothetical protein. (136 aa)    
Predicted Functional Partners:
cce_2021
Hypothetical protein.
 
     0.952
cce_2022
Hypothetical protein.
       0.701
cce_5213
Contains a poxvirus D5 protein domain.
  
     0.638
cce_2019
Unknown.
     
 0.604
cce_1293
Unknown.
  
     0.598
cce_2014
Putative ATP/GTP-binding protein.
 
     0.585
cce_1194
Hypothetical protein; Contains a CRISPR-associated helicase Cas3, core domain.
  
     0.584
cce_2017
Hypothetical protein.
       0.535
cce_2018
Unknown.
       0.535
cce_0355
DUF324-containing protein.
  
     0.534
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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