Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2052DUF1517-containing protein. (310 aa)    
Predicted Functional Partners:
cce_0950
Conserved hypothetical protein.
  
     0.748
cce_3735
Unknown.
  
     0.706
cce_4449
Conserved hypothetical protein.
  
     0.694
cce_2942
Unknown.
  
     0.690
cce_4447
Conserved hypothetical protein.
  
     0.669
cce_3909
Conserved hypothetical protein.
  
     0.667
ccs1
C-type cytochrome biogenesis protein; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
  
   
 0.655
cce_1543
Putative CAB/ELIP/HLIP superfamily protein.
  
     0.643
cce_3683
Hypothetical protein; Contains a GCN5-related N-acetyltransferase domain.
  
     0.632
cce_3736
Conserved hypothetical protein.
  
     0.632
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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