STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2057Unknown. (383 aa)    
Predicted Functional Partners:
cce_2058
Hypothetical protein; Contains a Chase2 domain.
 
     0.946
cce_2185
Hypothetical protein.
 
      0.897
cce_3128
Unknown.
  
     0.753
cce_1824
Conserved hypothetical protein.
  
     0.746
cce_3978
Hypothetical protein; Contains DUF1400.
  
     0.712
cce_2045
Unknown; Contains a TPR-like helical domain.
  
     0.693
cce_3095
Conserved hypothetical protein.
  
     0.676
cce_2420
ATP-binding protein of ABC transporter.
  
     0.637
cce_2511
Hypothetical protein.
  
     0.636
cce_4799
rfrA family pentapeptide repeat.
  
     0.630
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.