STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2062Putative aldose 1-epimerase. (290 aa)    
Predicted Functional Partners:
cce_2063
Putative phosphatidate cytidylyltransferase.
       0.743
cce_2932
Putative galactose-1-phosphate uridyl transferase, class I.
  
 
 0.695
cce_2067
Carbohydrate kinase, FGGY family.
 
  
 0.610
cce_2064
rfrA family pentapeptide repeat.
       0.494
cce_4637
N-acetyl-glucosamine-6-phosphate deacetylase.
 
  
 0.470
nagB
glucosamine-6-P isomerase.
 
   
 0.450
cce_2065
Unknown.
   
   0.439
cce_2522
ROK family protein.
 
   
 0.423
bvdR
Oxidoreductase, putative biliverdin reductase.
 
  
 0.406
cce_4356
Malate dehydrogenase (Oxaloacetate decarboxylating).
     
 0.402
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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