Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2089Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal and PKD domains. (1687 aa)    
Predicted Functional Partners:
cce_4759
Putative haem peroxidase.
  
     0.631
cce_0117
Hypothetical protein.
  
     0.626
cce_4809
Unknown.
  
    0.616
cce_0913
Putative peptidase.
  
   0.548
cce_0239
Hypothetical protein; Contains a Na-Ca exchanger/integrin-beta4 domain.
  
     0.532
cce_2678
HlyD-family secretion protein.
  
    0.519
cce_5144
Putative AAA ATPase.
  
    0.437
cce_1925
Contains a GTP-binding protein, HSR1-related domain.
  
     0.431
cce_0711
Glycosyl transferase, group 1.
  
     0.428
cce_2090
Putative ABC transporter permease protein.
       0.424
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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