STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2094Hypothetical protein; Contains a Methyltransferase type 11 domain. (219 aa)    
Predicted Functional Partners:
cce_3549
Hypothetical protein.
     0.756
cce_0881
Unknown; Contains DUF29.
   
   0.728
cce_0520
Putative methyltransferase.
  
 
   0.624
cce_2095
Unknown.
       0.551
cce_2096
Probable glycosyl transferase, family 2.
       0.509
cce_2097
Glycosyl transferase, group 1.
       0.509
cce_2098
Unknown.
       0.509
cce_3078
Polyketide synthase.
  
 
 0.508
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.485
cce_3079
Probable polyketide synthase.
  
 
 0.449
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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