Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2104Hypothetical protein; Contains UPF0102; Belongs to the UPF0102 family. (153 aa)    
Predicted Functional Partners:
cce_4061
Mg chelatase-like protein.
 
  
 0.710
smf
DNA processing protein.
 
  
 0.624
cce_2103
rfrA family pentapeptide repeat.
       0.605
comE
Competence protein.
  
    0.569
cyl0021
Hypothetical protein; Contains a phosphoribosyltransferase domain.
 
    0.559
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
    0.432
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
    0.432
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
  
    0.413
cce_2243
Unknown; Contains a GGDEF domain, EAL domain, and a pass fold-4 domain.
   
    0.410
cce_0894
DUF28-containing protein.
 
     0.403
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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