Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2105Hypothetical protein; Contains tetratricopeptide repeat domains. (315 aa)    
Predicted Functional Partners:
cce_2742
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.749
cce_2629
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.741
cce_0149
Probable protein phosphatase.
    
 
 0.731
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.716
cce_0764
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.712
cce_3632
Putative prenyltransferase.
  
   0.690
cce_2108
Probable ferredoxin.
 
     0.645
cce_2112
Hypothetical protein; Contains a 4-vinyl reductase, 4VR domain.
 
     0.624
cce_2106
Probable ferredoxin.
       0.615
cce_2622
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.562
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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