STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2107Contains a Phycobilisome protein and a globin-like domain. (163 aa)    
Predicted Functional Partners:
cce_2112
Hypothetical protein; Contains a 4-vinyl reductase, 4VR domain.
     
 0.816
cce_2109
Hypothetical protein; Contains a 4-vinyl reductase, 4VR domain.
     
 0.793
apcC
Phycobilisome LC linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
   
 
 0.773
cce_2108
Probable ferredoxin.
       0.766
apcE
Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
    
 
 0.761
cpcG
Phycobilisome rod-core linker polypeptide; Belongs to the phycobilisome linker protein family.
    
 
 0.753
cpcB
Phycocyanin beta subunit.
    
 
 0.742
cpcA
Phycocyanin alpha subunit.
    
 
 0.739
cce_2110
Contains a Phycobilisome protein and a globin-like domain.
     
 0.723
cce_2111
Hypothetical protein.
       0.664
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.