STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2192Putative HlyD-family secretion protein. (553 aa)    
Predicted Functional Partners:
cce_0891
Unknown; Contains an outer membrane efflux protein domain.
 
 
 0.993
hlyB1
Toxin secretion ABC transporter ATP-binding protein.
 
 
 0.962
cce_2355
Toxin secretion ABC transporter ATP-binding protein, HlyB family.
 
 0.932
hlyB2
Toxin secretion ABC transporter ATP-binding protein.
 
 0.930
cce_1185
Two-component hybrid sensor and regulator.
  
 
 0.900
cce_0656
Two-component hybrid sensor and regulator.
  
 
 0.890
cce_4114
devC-like ABC transporter permease protein.
 
 
 0.886
cce_0368
ATP-binding protein of ABC transporter.
  
 
 0.877
devA
ABC transporter ATP-binding protein, probable glycolipid exporter.
  
 
 0.877
lolD
ATP-binding protein of ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.877
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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