Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2194Conserved hypothetical protein. (251 aa)    
Predicted Functional Partners:
hlyB1
Toxin secretion ABC transporter ATP-binding protein.
 
   
 0.895
cce_2192
Putative HlyD-family secretion protein.
 
   
 0.873
slt
Probable soluble lytic transglycosylase.
  
 
 0.871
cce_2996
Unknown.
  
     0.770
cce_2356
Putative secretion protein, HlyD family.
 
     0.764
cce_3059
HlyD-family secretion protein.
 
     0.760
cce_2355
Toxin secretion ABC transporter ATP-binding protein, HlyB family.
 
   
 0.759
cce_4290
Hypothetical protein.
  
   
 0.757
cce_1334
Unknown.
  
     0.737
hlyB2
Toxin secretion ABC transporter ATP-binding protein.
 
   
 0.733
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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