STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_2195Hypothetical protein; Contains a hemolysin-type calcium-binding region. (605 aa)    
Predicted Functional Partners:
cce_2192
Putative HlyD-family secretion protein.
 
  
 0.763
cce_4795
Hypothetical protein.
  
     0.694
cce_2678
HlyD-family secretion protein.
  
    0.686
cce_0913
Putative peptidase.
 
   0.650
cce_3035
Hypothetical protein; Contains a VCBS repeat.
 
   0.647
hlyB1
Toxin secretion ABC transporter ATP-binding protein.
 
    0.639
cce_4621
Putative alkaline phosphatase; Belongs to the 5'-nucleotidase family.
 
     0.610
cce_2356
Putative secretion protein, HlyD family.
  
    0.545
cce_2194
Conserved hypothetical protein.
 
     0.536
cce_0711
Glycosyl transferase, group 1.
  
     0.530
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.