STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofGProbable general secretion pathway protein G. (188 aa)    
Predicted Functional Partners:
pilC
Pilin biogenesis protein.
 
  
 0.876
gspE
General secretion pathway protein E.
 
 
 0.856
cce_2912
Hypothetical protein.
 
 
 0.806
hofD
Type 4 prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.753
pilT1
Twitching motility protein.
 
   
 0.677
pilT2
Twitching motility protein.
 
   
 0.644
cce_2239
Contains an abortive infection protein domain.
       0.568
cce_0161
Putative membrane protein.
  
     0.567
comE
Competence protein.
  
  
 0.541
cce_3142
Hypothetical protein.
  
 
 0.530
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.