Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_2249Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains. (232 aa)    
Predicted Functional Partners:
cce_3632
Putative prenyltransferase.
 
 
 
 0.812
cce_0764
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.794
cce_2622
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
     0.738
cce_1239
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
 
   0.656
cce_0588
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
 
 
  
0.446
cce_5201
WD-repeat protein.
  
     0.443
cce_2852
Unknown; Contains a TPR-like helical domain.
  
     0.438
glgB1
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.424
cce_1076
Hypothetical protein; Contains a GUN4-like domain and a Peptidase, trypsin-like serine and cysteine domain.
  
 
 0.423
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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