Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
cce_2279Putative Lipolytic enzyme, G-D-S-L. (236 aa)    
Predicted Functional Partners:
cce_2429
Conserved hypothetical protein.
  
     0.699
cce_3294
Unknown.
  
     0.622
cce_2662
Conserved hypothetical protein.
  
     0.578
cce_4134
Hypothetical protein; Contains a Lipase, class 2 domain.
  
   
 0.577
cce_0018
Unknown; Contains a beta-lactamase-like domain.
  
     0.514
cce_2983
Unknown; Contains a TPR-like helical domain.
  
     0.500
cce_1644
Conserved hypothetical protein.
  
     0.493
cce_1893
Unknown.
  
 
   0.490
cce_4655
Conserved hypothetical protein.
  
     0.479
cce_4694
Unknown; Contains a GUN4-like domain.
  
     0.465
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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